PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01390g00030.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB_related
Protein Properties Length: 870aa    MW: 97992.8 Da    PI: 8.6119
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01390g00030.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.13.5e-07516559147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               + +WT+eE e   ++++ +G++ Wk  a ++g  + + ++k+ w+ +
  Peaxi162Scf01390g00030.1 516 KRKWTEEEYEMVRKYHEVHGNK-WKDLADELG--KHRFHVKDTWRRL 559
                               579*******************.********9..6788899888876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF568016.15E-8157No hitNo description
Gene3DG3DSA:3.40.50.9806.3E-7259No hitNo description
PfamPF005014.7E-8373IPR000873AMP-dependent synthetase/ligase
SMARTSM007170.028442513IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-5445532IPR009057Homeodomain-like
PROSITE profilePS512949.387512564IPR017930Myb domain
SMARTSM007170.13515562IPR001005SANT/Myb domain
SuperFamilySSF466892.73E-8516577IPR009057Homeodomain-like
PfamPF139211.3E-11519577No hitNo description
Gene3DG3DSA:1.10.10.604.0E-8533572IPR009057Homeodomain-like
PROSITE profilePS500907.968561629IPR017877Myb-like domain
SMARTSM007170.41565631IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-8573648IPR009057Homeodomain-like
SuperFamilySSF466896.37E-5609684IPR009057Homeodomain-like
PROSITE profilePS500907.758631684IPR017877Myb-like domain
SMARTSM0071717635686IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 870 aa     Download sequence    Send to blast
MCTSGITGLH KGALITLGSI VAIAAGFMTV ITKLENSDVC LAYLPFAHVF ELATETVILT  60
VRIQGYVSDG TVKKVETKGV SAKNRIETKF GAVLEDTTDI TERSMVIGDE KVGIPRKEKK  120
KSKKNNKNAD ISGLGMTMAD AAETRKDSVK AESETKPTGG SVNHDIKKKK KKKREDGTHP  180
DKSNKDSDES AAKCVEKKKH KKLKRSHQDE QQIILDAPIN TKSVAYASAR ERGDSENVIK  240
ILGEVSGGNA VEEIRRKKKS KKSNKHAVEG DLSSEEKKLC VVKGKKERDK VNMETKAAGE  300
SDVCDVKKNK EREGEKHPGK STKDSDKDDL GSVEKKKSKK LKKSCRDESE TMHGIEDEQE  360
AIVAKVNRGD ISSTVEEIEE QSRTDTGKIR KKKKATIGHS SEDPTHEKSE KKVRFSGHVE  420
IFPSSSDPSD EKHETEEENL LRGKRFSTLE DEIVKEAVHK YIEMHNLGEE GLEMILNSRS  480
HPELKGCWKE IGSAIPYRPY TAIYYRAQVL FRRSEKRKWT EEEYEMVRKY HEVHGNKWKD  540
LADELGKHRF HVKDTWRRLK LTNRNKGQWT QEEYQTLFDL VNTDLRLKLS EEKKSKHGML  600
RDNIAWTAIS GNLSTRTDAN CCLKWYDQLT SPMVSKGEWA DTDDYRLIDA LFELDASCIE  660
DVDWDNLVDH RPGEICRKRW NQMVLHIGQY VNKSFSEQVE VLAKRYRPEL VEVREAWDSK  720
PIVYYCRSKA GNASGGSDII EELTVDQEIN QTATETRDEG FDSVLLTKHK QKNVTESTKL  780
WPSAAISSSG KDNNCSHSEW LTHSALRINA GGHRYLPSCS HPFVADVQPS SCPAMISIFL  840
ILAGFLASGG FGATATFILI KPSFARLVKN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115123RKEKKKSKK
2167173KKKKKKR
3333340EKKKSKKL
4511517RRSEKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009760244.10.0PREDICTED: transcription termination factor 1-like
RefseqXP_016471261.10.0PREDICTED: transcription termination factor 1-like
RefseqXP_016471262.10.0PREDICTED: transcription termination factor 1-like
TrEMBLM1B8D70.0M1B8D7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000395060.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10291429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-122MYB_related family protein